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Anomalies of the female genital tract

Last updated: January 27, 2026

Summarytoggle arrow icon

Structural anomalies of the female genital tract may be present at birth or may be acquired later in life. Common congenital anomalies of the female genital tract are anomalies of Müllerian duct fusion and an imperforate hymen. Impaired fusion of the Müllerian ducts can result in duplication of the uterus, cervix, and/or vagina, while incomplete fusion results in an intrauterine and/or intravaginal septum. Rarely, the Müllerian duct may be completely absent (Müllerian agenesis), resulting in the absence of the uterus, cervix, and vagina. Acquired structural anomalies include intrauterine adhesions and labial adhesions. Intrauterine adhesions occur following uterine curettage or as a result of pelvic inflammatory disease. Labial adhesions are the result of estrogen deficiency during childhood. Most patients with structural anomalies of the female genital tract remain asymptomatic until puberty. Intrauterine adhesions present with secondary amenorrhea, while Müllerian agenesis and imperforate hymen present with primary amenorrhea. Infertility may be the initial symptom in all structural anomalies of the genital tract. Structural anomalies of the uterus and cervix are diagnosed with imaging such as transvaginal ultrasonography. Surgical reconstruction or resection is the main treatment for both the congenital and acquired genital tract anomalies. Labial adhesions are a primarily clinical diagnosis, and are treated with topical estrogen.

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Anomalies of the uterustoggle arrow icon

Anomalies of Müllerian duct fusion

Anomalies of Müllerian duct fusion [1]
Types of fusion anomalies Relative frequency Pathophysiology
Müllerian agenesis
  • Rare
Unicornuate uterus
  • 10%
Didelphic uterus
  • 8%
Bicornuate uterus
  • 26%
Septate uterus
  • 35%
DES-related abnormality
  • Rare

In patients with infertility and congenital uterine anomalies, it is important to rule out other causes of infertility before surgical therapy is considered.

The mere presence of a Müllerian duct anomaly does not necessitate surgical therapy.

Intrauterine adhesions (Asherman syndrome)

Individuals with Asherman syndrome have intrauterine Adhesions.

References:[4][5][6]

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Anomalies of the vaginatoggle arrow icon

Agenesis of the upper vagina

Agenesis of the lower vagina

Transverse vaginal septum

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Imperforate hymentoggle arrow icon

An imperforate hymen is a congenital anomaly in which the hymen obstructs the opening to the vagina. [8]

Epidemiology

  • Incidence: 1:1000–2000 individuals born with female genitalia [9][10]

Pathophysiology

Central cells of the Müllerian eminence in the urogenital sinus do not disintegrate → imperforate hymen cryptomenorrhea at puberty (outflow tract obstruction leads to backup of menstrual blood) hematocolpos; (accumulation of blood in the vagina) and/or hematometra (accumulation of blood in the uterus)

Clinical features [8][11]

Imperforate hymen may resolve spontaneously during puberty due to the effects of estrogen. [8]

Differential diagnoses [8][10]

Diagnosis [8][10]

Treatment [8]

Refer all patients to gynecology.

Do not perform incision of an imperforate hymen with drainage of the associated hematocolpos, as there is an increased risk of complications (e.g., infection). [10][11]

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Labial adhesionstoggle arrow icon

  • Definition: partial or complete adhesion of the labia minora
  • Epidemiology: occurs in 2–5% of female individuals up to 4 years of age
  • Etiology:
  • Clinical features
    • Usually asymptomatic
    • If external urethral opening is obstructed: recurrent attacks of UTI, vaginitis, vestibulitis
    • Perineal examination
      • A thin vertical midline fold in the perineum
      • The labia, vaginal opening, and occasionally the urethral meatus are not visible.
  • Diagnostics: : primarily clinical diagnosis
  • Treatment: : application of topical estrogen
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